(address . guix-patches@gnu.org)(name . zimoun)(address . zimon.toutoune@gmail.com)
* gnu/packages/bioconductor.scm (r-flowsom): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ab4d9f4075..dd6570ed17 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4930,3 +4930,32 @@ and to both short and long sequence reads.")
"This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.")
(license license:artistic2.0))) ;TODO: artistic1.0 does not exist
+(define-public r-flowsom
+ (package
+ (name "r-flowsom")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FlowSOM" version))
+ (sha256
+ (base32
+ "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l"))))
+ (properties `((upstream-name . "FlowSOM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-consensusclusterplus"
+ ,r-consensusclusterplus)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowutils" ,r-flowutils)
+ ("r-igraph" ,r-igraph)
+ ("r-tsne" ,r-tsne)
+ ("r-xml" ,r-xml)))
+ (home-page "http://www.r-project.org")
+ (synopsis
+ "Using self-organizing maps for visualization and interpretation of cytometry data")
+ (description
+ "FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.")
+ (license license:gpl2+)))
+
--
2.21.0