Dear all, I am submitting a patch series for r-fhtest and its dependencies.Note that one of its dependency r-kmsurv is not included here, becauseI previously submitted its patch in patch 2 of bug#42107. Regards,Peter
Toggle diff (39 lines)diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scmindex ab5e57c0e2..8be110a9bd 100644--- a/gnu/packages/cran.scm+++ b/gnu/packages/cran.scm@@ -22325,3 +22325,32 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3)))++(define-public r-mlecens+ (package+ (name "r-mlecens")+ (version "0.1-4")+ (source+ (origin+ (method url-fetch)+ (uri (cran-uri "MLEcens" version))+ (sha256+ (base32+ "0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"))))+ (properties `((upstream-name . "MLEcens")))+ (build-system r-build-system)+ (home-page "http://stat.ethz.ch/~maathuis/")+ (synopsis+ "Computation of the MLE for bivariate (interval) censored data")+ (description+ "This package contains functions to compute the nonparametric+maximum likelihood estimator (MLE) for the bivariate distribution+of (X,Y), when realizations of (X,Y) cannot be observed directly. To+be more precise, we consider the situation where we observe a set of+rectangles that are known to contain the unobservable realizations+of (X,Y). We compute the MLE based on such a set of rectangles. The+methods can also be used for univariate censored data (see data set+@code{cosmesis}), and for censored data with competing risks (see data+set @code{menopause}). We also provide functions to visualize the+observed data and the MLE.")+ (license license:gpl2+)))-- 2.17.1
Toggle diff (31 lines)diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scmindex 8be110a9bd..fe1a8e0b46 100644--- a/gnu/packages/cran.scm+++ b/gnu/packages/cran.scm@@ -22354,3 +22354,24 @@ methods can also be used for univariate censored data (see data set set @code{menopause}). We also provide functions to visualize the observed data and the MLE.") (license license:gpl2+)))++(define-public r-perm+ (package+ (name "r-perm")+ (version "1.0-0.0")+ (source+ (origin+ (method url-fetch)+ (uri (cran-uri "perm" version))+ (sha256+ (base32+ "0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"))))+ (properties `((upstream-name . "perm")))+ (build-system r-build-system)+ (home-page+ "https://cran.r-project.org/web/packages/perm/")+ (synopsis+ "Exact or Asymptotic permutation tests")+ (description+ "Perform Exact or Asymptotic permutation tests")+ (license (list license:gpl2+ license:gpl3+))))-- 2.17.1
Toggle diff (41 lines)diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scmindex d3cd199130..3d02139f87 100644--- a/gnu/packages/cran.scm+++ b/gnu/packages/cran.scm@@ -22402,3 +22402,34 @@ observed data and the MLE.") "This package provides functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests.") (license license:gpl2+)))++(define-public r-fhtest+ (package+ (name "r-fhtest")+ (version "1.4")+ (source+ (origin+ (method url-fetch)+ (uri (cran-uri "FHtest" version))+ (sha256+ (base32+ "1wsn0j9ydpp9nfswiqg21p09kgkvaq8fh0y0h8syqgizah7i8vs2"))))+ (properties `((upstream-name . "FHtest")))+ (build-system r-build-system)+ (propagated-inputs+ `(("r-interval" ,r-interval)+ ("r-kmsurv" ,r-kmsurv)+ ("r-mass" ,r-mass)+ ("r-perm" ,r-perm)+ ("r-survival" ,r-survival)))+ (home-page+ "https://cran.r-project.org/web/packages/FHtest/")+ (synopsis+ "Tests for Survival Data Based on the Fleming-Harrington Class")+ (description+ "This package provides functions to compare two or more survival+curves with: a) The Fleming-Harrington test for right-censored data+based on permutations and on counting processes. b) An extension of+the Fleming-Harrington test for interval-censored data based on a+permutation distribution and on a score vector distribution.")+ (license license:gpl2+)))-- 2.17.1