(address . guix-patches@gnu.org)(name . zimoun)(address . zimon.toutoune@gmail.com)
20190724182204.6818-4-zimon.toutoune@gmail.com
* gnu/packages/bioconductor.scm (r-all): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e5a2d66b2d..18b5711496 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -865,6 +865,36 @@ which were then sequenced to a depth of ~4 million reads per library,
resulting in a complete gene expression profile for each cell.")
(license license:artistic2.0)))
+(define-public r-all
+ (package
+ (name "r-all")
+ (version "1.26.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/experiment/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/experiment/src/contrib/"
+ "ALL_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1z7kpjw4ndj6fkxwvhqf3gawhrn26ksrlns7j2c78qzxqmjndik9"))))
+ (properties
+ `((upstream-name . "ConsensusClusterPlus")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)))
+ (home-page
+ "https://bioconductor.org/packages/ALL")
+ (synopsis "Acute Lymphoblastic Leukemia data from the Ritz laboratory")
+ (description
+ "The data consist of microarrays from 128 different individuals with
+acute lymphoblastic leukemia (ALL). A number of additional covariates are
+available. The data have been normalized (using rma) and it is the jointly
+normalized data that are available here. The data are presented in the form of
+an exprSet object.")
+ (license license:artistic2.0)))
+
;;; Packages
--
2.21.0